Publications

In this letter, we propose a method to improve the accuracy of trajectory optimization for dynamic robots with intermittent contact by using orthogonal collocation. Until recently, most trajectory optimization methods for systems with contacts employ mode-scheduling, which requires an a priori knowledge of the contact order and thus cannot produce complex or non-intuitive behaviors. Contact-implicit trajectory optimization methods offer a solution to this by allowing the optimization to make or break contacts as needed, but thus far have suffered from poor accuracy. Here, we combine methods from direct collocation using higher order orthogonal polynomials with contact-implicit optimization to generate trajectories with significantly improved accuracy. The key insight is to increase the order of the polynomial representation while maintaining the assumption that impact occurs over the duration of one finite element.

Noninvasive behavioral tracking of animals during experiments is crucial to many scientific pursuits. Extracting the poses of animals without using markers is often essential for measuring behavioral effects in biomechanics, genetics, ethology & neuroscience. Yet, extracting detailed poses without markers in dynamically changing backgrounds has been challenging. We recently introduced an open source toolbox called DeepLabCut that builds on a state-of-the-art human pose estimation algorithm to allow a user to train a deep neural network using limited training data to precisely track user-defined features that matches human labeling accuracy. Here, with this paper we provide an updated toolbox that is self contained within a Python package that includes new features such as graphical user interfaces and active-learning based network refinement. Lastly, we provide a step-by-step guide for using DeepLabCut.

In this work we present an extensive dataset of free-running cheetahs in the wild, called AcinoSet, that contains 119, 490 frames of multi-view synchronized high-speed video footage, camera calibration files and 7, 588 human-annotated frames. Markerless animal pose estimation is used to provide 2D keypoints. Three methods are employed for 3D pose estimation: sparse bundle adjustment, an Extended Kalman Filter, and a trajectory optimization-based method we call Full Trajectory Estimation. The resulting 3D trajectories, human-checked 3D ground truth, and an interactive tool to inspect the data is also provided. We believe this dataset will be useful for a diverse range of fields such as ecology, neuroscience, robotics, biomechanics as well as computer vision. Code and data can be found at: https://github.com/African-Robotics-Unit/AcinoSet.